Links to
SABIO-RK related websites
- SABIO-RK Team
- SABIO-RK Public Curation List
- SABIO-RK Google Group
- SABIO-RK Input Interface (internal)
- ChemHITS
- CompoundClassification
Modelling tools
- CellDesigner
- SBMLsqueezer (plugin for CellDesigner)
- Copasi
- Sycamore
- VCell - The Virtual Cell
- Cytoscape
- cy3sabiork (app for Cytoscape)
Databases
- ChEBI - Chemical Entities of Biological Interest
- KEGG - Kyoto Encyclopedia of Genes and Genomes
- BRENDA - Enzyme Database
- BKMS-react – Biochemical Reactions Database
- ExPASy - Enzyme nomenclature database
- ExplorEnz - Enzyme Database
- Pubchem - Substance, Compound, and BioAssay
- Pubmed - Biomedical Literature Database
- IntEnz - Integrated relational Enzyme Database
- Reactome - Pathway Database
- UniProt - Protein Knowledgebase
- BioModels - Database for Computational Models
- MetaCrop - Plant Metabolism Database
- MetaNetX - Platform for Metabolic Networks
- Rhea - Biochemical Reactions Database
- JWS online - Database for Computational Models
- NextProt - Database for Human Proteins
- ChloroKB - Arabidopsis Chloroplast Database
- ChemSpider - Chemical Structure Database
- OMIM - Online Catalog of Human Genes and Genetic Disorders
- Datanator - Tools for discovering data for modeling cellular biochemistry
- EuropePMC - Life Sciences Literature Database
- STRENDA DB - Enzymology Database
Ontologies / Controlled Vocabularies
- NCBI Organism Taxonomy
- BRENDA Tissue Ontology
- IUBMB Enzyme Nomenclature
- ChEBI Ontology
- Gene Ontology
- Systems Biology Ontology
- Cellosaurus Cell Line Ontology
Data exchange formats
- SBML - Systems Biology Markup Language
- BioPAX - Biological Pathway Exchange
- SBPAX - Systems Biology Pathway Exchange
- Systems Biology Format Converter (SBFC)
- EnzymeML - Exchange of Enzyme-catalysed Reaction Data
